Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase reca | DW935_10895 | Not Available | Positive | 2527380 - 2528423 | 37350.7 |
| duf4923 family protein | DW935_10900 | Not Available | Negative | 2528618 - 2529214 | 21522.2 |
| helix-turn-helix domain-containing protein | DW935_10905 | Not Available | Positive | 2529376 - 2529498 | 4640.55 |
| carboxylating nicotinate-nucleotide diphosphorylase | DW935_10910 | Not Available | Negative | 2529613 - 2530464 | 31272.2 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DW935_10915 | Not Available | Positive | 2530545 - 2531018 | 18355.5 |
| endonuclease | DW935_10920 | Not Available | Negative | 2531095 - 2532105 | 38237.8 |
| aminoacyl-histidine dipeptidase | DW935_10925 | Not Available | Negative | 2532111 - 2533568 | 53122.6 |
| hypothetical protein | DW935_10930 | Not Available | Positive | 2533790 - 2534017 | 8190.17 |
| omph family outer membrane protein | DW935_10935 | Not Available | Positive | 2534040 - 2534654 | 23085.3 |
| thioredoxin | DW935_10940 | Not Available | Positive | 2534773 - 2535069 | 11303.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

