Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cfxa family class a broad-spectrum beta-lactamase | DW935_10840 | Not Available | Positive | 2515827 - 2516792 | 35378.6 |
| mobilization protein | DW935_10845 | Not Available | Negative | 2516885 - 2518288 | 54960.8 |
| hypothetical protein | DW935_10850 | Not Available | Negative | 2518571 - 2519686 | 42693.9 |
| helicase | DW935_10855 | Not Available | Negative | 2519690 - 2520787 | 40866.6 |
| helix-turn-helix domain-containing protein | DW935_10860 | Not Available | Negative | 2520793 - 2521167 | 14142.9 |
| transposase | DW935_10865 | Not Available | Negative | 2521367 - 2522224 | 33369.8 |
| site-specific integrase | DW935_10870 | Not Available | Negative | 2522472 - 2523590 | 43474.8 |
| helix-turn-helix domain-containing protein | DW935_10875 | Not Available | Negative | 2523732 - 2524667 | 36228.9 |
| saccharopine dehydrogenase family protein | DW935_10885 | Not Available | Positive | 2525660 - 2526853 | 44966.5 |
| thioredoxin-dependent thiol peroxidase | DW935_10890 | Not Available | Positive | 2526921 - 2527367 | 16910.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

