Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3'-5' exonuclease domain-containing protein 2 | DW935_10515 | Not Available | Positive | 2440030 - 2440680 | 24635.5 |
| class i sam-dependent rrna methyltransferase | DW935_10520 | Not Available | Positive | 2440670 - 2441854 | 44449.1 |
| class i sam-dependent methyltransferase | DW935_10525 | Not Available | Negative | 2442507 - 2443295 | 30974.2 |
| autotransporter outer membrane beta-barrel domain-containing protein | DW935_10530 | Not Available | Negative | 2443352 - 2444590 | 47302.1 |
| sigma-70 family rna polymerase sigma factor | DW935_10535 | Not Available | Negative | 2444587 - 2445132 | 20808.2 |
| galactose mutarotase | DW935_10545 | Not Available | Positive | 2445766 - 2446899 | 41888.4 |
| sigma-70 family rna polymerase sigma factor | DW935_10550 | Not Available | Positive | 2447086 - 2447556 | 18010.0 |
| hypothetical protein | DW935_10555 | Not Available | Positive | 2447547 - 2448113 | 21072.0 |
| duf5024 domain-containing protein | DW935_10560 | Not Available | Positive | 2448135 - 2448749 | 22972.6 |
| mfs transporter | DW935_10565 | Not Available | Positive | 2448951 - 2450228 | 46736.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

