Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DW935_10250 | Not Available | Negative | 2381930 - 2382298 | 14110.3 |
| hypothetical protein | DW935_10255 | Not Available | Positive | 2382581 - 2383498 | 34842.8 |
| mobilization protein | DW935_10260 | Not Available | Negative | 2383495 - 2384265 | 29049.2 |
| site-specific integrase | DW935_10265 | Not Available | Negative | 2384463 - 2385569 | 43186.5 |
| dna-binding protein | DW935_10270 | Not Available | Negative | 2385662 - 2386558 | 35095.3 |
| xre family transcriptional regulator | DW935_10275 | Not Available | Positive | 2387494 - 2387814 | 11919.9 |
| type ii toxin-antitoxin system hipa family toxin | DW935_10280 | Not Available | Positive | 2387818 - 2389074 | 47564.5 |
| xre family transcriptional regulator | DW935_10285 | Not Available | Positive | 2389401 - 2389631 | 8831.63 |
| dna (cytosine-5-)-methyltransferase | DW935_10290 | Not Available | Positive | 2389621 - 2390727 | 41938.7 |
| atp-binding protein | DW935_10295 | Not Available | Positive | 2390730 - 2392247 | 58307.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

