Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW935_09730 | Not Available | Negative | 2265063 - 2266505 | 54928.9 |
| susc/raga family tonb-linked outer membrane protein | DW935_09735 | Not Available | Negative | 2266518 - 2269799 | 123205.0 |
| tlpa family protein disulfide reductase | DW935_09740 | Not Available | Negative | 2269829 - 2271169 | 51206.7 |
| putative dna modification/repair radical sam protein | DW935_09745 | Not Available | Positive | 2271527 - 2272795 | 48564.8 |
| dna metabolism protein | DW935_09750 | Not Available | Positive | 2272792 - 2273559 | 30630.9 |
| trna pseudouridine(38-40) synthase trua | DW935_09755 | Not Available | Negative | 2273525 - 2274328 | 30885.8 |
| hypothetical protein | DW935_09760 | Not Available | Negative | 2274333 - 2275007 | 24792.2 |
| phoh family protein | DW935_09765 | Not Available | Positive | 2275165 - 2276169 | 37699.4 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DW935_09770 | Not Available | Positive | 2276190 - 2277134 | 35902.1 |
| demethylmenaquinone methyltransferase | DW935_09775 | Not Available | Positive | 2277227 - 2277964 | 27936.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

