Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock domain-containing protein | DW935_09575 | Not Available | Positive | 2226290 - 2226736 | 17045.4 |
| ribonuclease z | DW935_09580 | Not Available | Positive | 2226807 - 2227736 | 35274.9 |
| rna polymerase sigma factor | DW935_09585 | Not Available | Positive | 2227770 - 2228321 | 21644.9 |
| hypothetical protein | DW935_09590 | Not Available | Positive | 2228366 - 2228743 | 14654.4 |
| hypothetical protein | DW935_09595 | Not Available | Positive | 2228755 - 2229201 | 17649.5 |
| tonb-dependent receptor | DW935_09600 | Not Available | Positive | 2229475 - 2232636 | 117888.0 |
| nucleoside triphosphate pyrophosphohydrolase | DW935_09610 | Not Available | Negative | 2234585 - 2235373 | 30701.6 |
| valine--trna ligase | DW935_09615 | Not Available | Positive | 2235481 - 2238108 | 99759.7 |
| hypothetical protein | DW935_09620 | Not Available | Negative | 2238289 - 2238729 | 16110.3 |
| sigma-70 family rna polymerase sigma factor | DW935_09625 | Not Available | Positive | 2238874 - 2239419 | 21010.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

