Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| creatininase family protein | DW935_09025 | Not Available | Positive | 2136531 - 2137286 | 28527.2 |
| tonb-dependent receptor | DW935_09030 | Not Available | Positive | 2137935 - 2141276 | 123157.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_09035 | Not Available | Positive | 2141298 - 2142863 | 58966.7 |
| acyl-coa thioesterase | DW935_09040 | Not Available | Negative | 2142992 - 2143441 | 17238.7 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DW935_09045 | Not Available | Positive | 2143564 - 2144841 | 47021.8 |
| sdr family nad(p)-dependent oxidoreductase | DW935_09050 | Not Available | Positive | 2144852 - 2145580 | 27098.2 |
| duf4252 domain-containing protein | DW935_09055 | Not Available | Positive | 2145917 - 2146402 | 18355.6 |
| rna polymerase sigma factor | DW935_09060 | Not Available | Positive | 2146389 - 2146901 | 19997.8 |
| hypothetical protein | DW935_09065 | Not Available | Positive | 2146888 - 2147418 | 20186.3 |
| duf4252 domain-containing protein | DW935_09070 | Not Available | Positive | 2147415 - 2147873 | 17337.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

