Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DW935_08970 | Not Available | Negative | 2116037 - 2118391 | 89679.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_08975 | Not Available | Negative | 2118469 - 2120259 | 69562.5 |
| tonb-dependent receptor | DW935_08980 | Not Available | Negative | 2120271 - 2123378 | 116922.0 |
| duf4974 domain-containing protein | DW935_08985 | Not Available | Negative | 2123850 - 2124779 | 36336.7 |
| rna polymerase sigma-70 factor | DW935_08990 | Not Available | Negative | 2124886 - 2125449 | 22325.0 |
| alpha-galactosidase | DW935_08995 | Not Available | Negative | 2126334 - 2128490 | 82516.2 |
| hypothetical protein | DW935_09000 | Not Available | Positive | 2128742 - 2132209 | 133426.0 |
| duf418 domain-containing protein | DW935_09005 | Not Available | Negative | 2132358 - 2133539 | 45435.0 |
| atp-binding protein | DW935_09015 | Not Available | Negative | 2133864 - 2135135 | 49379.9 |
| iron-containing alcohol dehydrogenase | DW935_09020 | Not Available | Positive | 2135359 - 2136531 | 42892.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

