Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DW935_08695 | Not Available | Positive | 2053342 - 2054352 | 38656.1 |
| glycosyl hydrolase family 109 protein 2 | DW935_08700 | Not Available | Negative | 2054475 - 2055716 | 47387.7 |
| glycosidase | DW935_08705 | Not Available | Negative | 2056175 - 2057176 | 37626.8 |
| mfs transporter | DW935_08710 | Not Available | Negative | 2057209 - 2058507 | 47974.8 |
| glycoside hydrolase family 97 protein | DW935_08715 | Not Available | Negative | 2058631 - 2060646 | 75899.3 |
| endonuclease | DW935_08720 | Not Available | Negative | 2060834 - 2061679 | 31946.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW935_08725 | Not Available | Negative | 2061723 - 2063492 | 66868.9 |
| susc/raga family tonb-linked outer membrane protein | DW935_08730 | Not Available | Negative | 2063516 - 2066917 | 124999.0 |
| glycoside hydrolase family 92 protein | DW935_08740 | Not Available | Negative | 2067206 - 2069518 | 87838.7 |
| glycoside hydrolase family 92 protein | DW935_08745 | Not Available | Negative | 2069548 - 2071830 | 86462.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

