Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| right-handed parallel beta-helix repeat-containing protein | DW935_08645 | Not Available | Negative | 2032945 - 2034459 | 55846.1 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_08650 | Not Available | Negative | 2034628 - 2036247 | 59890.2 |
| tonb-dependent receptor | DW935_08655 | Not Available | Negative | 2036259 - 2039330 | 114451.0 |
| response regulator | DW935_08660 | Not Available | Negative | 2039471 - 2043631 | 157815.0 |
| arac family transcriptional regulator | DW935_08665 | Not Available | Positive | 2043780 - 2044700 | 35128.8 |
| lytic transglycosylase domain-containing protein | DW935_08670 | Not Available | Positive | 2044708 - 2045706 | 37375.8 |
| ion transporter | DW935_08675 | Not Available | Negative | 2045732 - 2046589 | 32741.9 |
| duf4981 domain-containing protein | DW935_08680 | Not Available | Positive | 2046705 - 2049800 | 117529.0 |
| tonb-dependent receptor | DW935_08685 | Not Available | Positive | 2050196 - 2052763 | 97462.0 |
| rna polymerase sigma-70 factor | DW935_08690 | Not Available | Positive | 2052818 - 2053345 | 20848.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

