Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | DW935_08595 | Not Available | Negative | 2022568 - 2023692 | 40936.8 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DW935_08600 | Not Available | Negative | 2023706 - 2024674 | 36000.4 |
| argininosuccinate synthase | DW935_08605 | Not Available | Negative | 2024680 - 2025888 | 45126.7 |
| n-acetyltransferase | DW935_08610 | Not Available | Negative | 2025989 - 2026546 | 20661.0 |
| arginine repressor | DW935_08615 | Not Available | Negative | 2026569 - 2027045 | 17529.3 |
| rhamnulokinase | DW935_08620 | Not Available | Positive | 2027352 - 2028830 | 55022.8 |
| l-rhamnose isomerase | DW935_08625 | Not Available | Positive | 2028870 - 2030126 | 47536.4 |
| l-rhamnose/proton symporter rhat | DW935_08630 | Not Available | Positive | 2030219 - 2031238 | 36173.2 |
| rhamnulose-1-phosphate aldolase | DW935_08635 | Not Available | Positive | 2031324 - 2032133 | 30253.7 |
| duf4251 domain-containing protein | DW935_08640 | Not Available | Positive | 2032342 - 2032839 | 18492.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

