Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na+-dependent phosphate transporter | DW935_08380 | Not Available | Positive | 1971759 - 1972133 | 14304.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW935_08385 | Not Available | Negative | 1972212 - 1973078 | 31372.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW935_08390 | Not Available | Negative | 1973100 - 1973684 | 21446.7 |
| nad-dependent deacylase | DW935_08395 | Not Available | Positive | 1973812 - 1974510 | 25688.9 |
| rubredoxin | DW935_08400 | Not Available | Positive | 1974585 - 1974749 | 5868.75 |
| polyribonucleotide nucleotidyltransferase | DW935_08405 | Not Available | Negative | 1974934 - 1977069 | 78631.8 |
| duf4369 domain-containing protein | DW935_08410 | Not Available | Positive | 1977285 - 1978433 | 42886.3 |
| transcription elongation factor grea | DW935_08415 | Not Available | Positive | 1978634 - 1979098 | 16780.4 |
| hit family protein | DW935_08420 | Not Available | Positive | 1979150 - 1979557 | 15026.2 |
| mannose-1-phosphate guanylyltransferase | DW935_08425 | Not Available | Negative | 1979645 - 1980688 | 39478.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

