Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DW935_08015 | Not Available | Negative | 1878882 - 1882058 | 121403.0 |
| lysine exporter lyso family protein | DW935_08020 | Not Available | Negative | 1882072 - 1882674 | 21649.9 |
| duf340 domain-containing protein | DW935_08025 | Not Available | Negative | 1882671 - 1882952 | 10217.2 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_08030 | Not Available | Negative | 1883067 - 1884584 | 57946.4 |
| tonb-dependent receptor | DW935_08035 | Not Available | Negative | 1884605 - 1887733 | 116534.0 |
| tetratricopeptide repeat protein | DW935_08040 | Not Available | Negative | 1887957 - 1889582 | 63094.9 |
| ribonuclease hii | DW935_08045 | Not Available | Positive | 1889684 - 1890289 | 22930.4 |
| l-fucose:h+ symporter permease | DW935_08050 | Not Available | Negative | 1890432 - 1891745 | 48425.4 |
| l-fucose isomerase | DW935_08055 | Not Available | Negative | 1891858 - 1893633 | 65623.1 |
| gntr family transcriptional regulator | DW935_08060 | Not Available | Negative | 1893655 - 1894635 | 38069.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

