Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i dna topoisomerase | DW935_07865 | Not Available | Positive | 1846623 - 1849061 | 91433.3 |
| shikimate kinase | DW935_07870 | Not Available | Positive | 1849058 - 1849585 | 20453.7 |
| biosynthetic arginine decarboxylase | DW935_07875 | Not Available | Positive | 1849627 - 1851519 | 71492.0 |
| acetylglutamate kinase | DW935_07880 | Not Available | Positive | 1851524 - 1852297 | 27207.2 |
| rna polymerase sigma factor | DW935_07885 | Not Available | Positive | 1852361 - 1852870 | 20188.3 |
| hypothetical protein | DW935_07890 | Not Available | Positive | 1852860 - 1853339 | 18339.8 |
| duf2807 domain-containing protein | DW935_07895 | Not Available | Negative | 1853537 - 1854268 | 25934.4 |
| m48 family peptidase | DW935_07900 | Not Available | Positive | 1854375 - 1855079 | 27268.4 |
| acetylxylan esterase | DW935_07905 | Not Available | Positive | 1855100 - 1856410 | 49236.1 |
| hypothetical protein | DW935_07910 | Not Available | Positive | 1856515 - 1857165 | 24753.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

