Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferrous iron transport protein b | DW935_07605 | Not Available | Negative | 1792128 - 1794596 | 92758.5 |
| trna lysidine(34) synthetase tils | DW935_07610 | Not Available | Positive | 1794717 - 1796021 | 50064.5 |
| site-specific integrase | DW935_07620 | Not Available | Negative | 1797835 - 1798953 | 43299.0 |
| holliday junction branch migration dna helicase ruvb | DW935_07625 | Not Available | Positive | 1799080 - 1800108 | 38022.6 |
| lipopolysaccharide biosynthesis protein | DW935_07630 | Not Available | Positive | 1800112 - 1801557 | 54344.9 |
| tigr00341 family protein | DW935_07635 | Not Available | Positive | 1801560 - 1802924 | 50535.2 |
| s46 family peptidase | DW935_07640 | Not Available | Positive | 1802929 - 1805055 | 80117.9 |
| atp-dependent rna helicase | DW935_07645 | Not Available | Negative | 1805376 - 1807250 | 70716.0 |
| transcriptional regulator | DW935_07650 | Not Available | Negative | 1807512 - 1807724 | 7789.65 |
| hypothetical protein | DW935_07655 | Not Available | Negative | 1807728 - 1807985 | 10168.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

