Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod/siga | DW935_07190 | Not Available | Positive | 1697312 - 1698172 | 32805.3 |
| hypothetical protein | DW935_07195 | Not Available | Positive | 1698394 - 1698789 | 15100.5 |
| clostripain | DW935_07200 | Not Available | Positive | 1698800 - 1700062 | 46782.5 |
| hypothetical protein | DW935_07205 | Not Available | Negative | 1700046 - 1700444 | 15058.6 |
| divalent metal cation transporter | DW935_07210 | Not Available | Positive | 1700547 - 1701800 | 45774.1 |
| potassium/proton antiporter | DW935_07215 | Not Available | Negative | 1701877 - 1703325 | 52867.7 |
| mate family efflux transporter | DW935_07220 | Not Available | Negative | 1703322 - 1704674 | 49414.7 |
| had family hydrolase | DW935_07225 | Not Available | Positive | 1704764 - 1705414 | 24626.3 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DW935_07230 | Not Available | Positive | 1705467 - 1706288 | 29580.9 |
| mfs transporter | DW935_07235 | Not Available | Positive | 1706303 - 1707469 | 43903.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

