Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW935_06925 | Not Available | Positive | 1620460 - 1623579 | 115361.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_06930 | Not Available | Positive | 1623601 - 1625046 | 54456.1 |
| tonb-dependent receptor | DW935_06935 | Not Available | Positive | 1625257 - 1628331 | 113228.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_06940 | Not Available | Positive | 1628357 - 1629856 | 55427.3 |
| duf4981 domain-containing protein | DW935_06945 | Not Available | Positive | 1629986 - 1633177 | 122000.0 |
| glycoside hydrolase family 2 | DW935_06950 | Not Available | Positive | 1633268 - 1636108 | 106085.0 |
| dna-binding protein | DW935_06955 | Not Available | Positive | 1636256 - 1639486 | 121484.0 |
| sialate o-acetylesterase | DW935_06960 | Not Available | Positive | 1639504 - 1640928 | 53436.1 |
| hypothetical protein | DW935_06965 | Not Available | Positive | 1640941 - 1643172 | 85678.8 |
| linear amide c-n hydrolase | DW935_06970 | Not Available | Positive | 1643386 - 1644465 | 39671.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

