Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DW935_06620 | Not Available | Negative | 1556412 - 1557488 | 39980.6 |
| amidophosphoribosyltransferase | DW935_06625 | Not Available | Negative | 1557514 - 1559397 | 71341.8 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DW935_06630 | Not Available | Negative | 1559556 - 1561400 | 67581.3 |
| glutamine synthetase type iii | DW935_06635 | Not Available | Negative | 1561714 - 1563903 | 82006.6 |
| ammonium transporter | DW935_06640 | Not Available | Negative | 1563961 - 1565319 | 47778.7 |
| p-ii family nitrogen regulator | DW935_06645 | Not Available | Negative | 1565395 - 1565751 | 13455.3 |
| hypothetical protein | DW935_06650 | Not Available | Negative | 1565869 - 1566594 | 25665.8 |
| ll-diaminopimelate aminotransferase | DW935_06655 | Not Available | Negative | 1566710 - 1567939 | 45835.8 |
| diaminopimelate epimerase | DW935_06660 | Not Available | Negative | 1567986 - 1568828 | 30266.6 |
| glutamate synthase large subunit | DW935_06665 | Not Available | Positive | 1569352 - 1573830 | 164771.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

