Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter permease psta | DW935_06315 | Not Available | Negative | 1485454 - 1486341 | 32091.4 |
| phosphate abc transporter permease subunit pstc | DW935_06320 | Not Available | Negative | 1486438 - 1487625 | 42806.7 |
| psts family phosphate abc transporter substrate-binding protein | DW935_06325 | Not Available | Positive | 1487893 - 1488711 | 29981.5 |
| glutamine--trna ligase/yqey domain fusion protein | DW935_06330 | Not Available | Positive | 1488769 - 1490508 | 66876.0 |
| tetratricopeptide repeat protein | DW935_06335 | Not Available | Positive | 1490519 - 1492036 | 59233.0 |
| deda family protein | DW935_06340 | Not Available | Positive | 1492044 - 1492670 | 23001.3 |
| thiol peroxidase | DW935_06345 | Not Available | Positive | 1492739 - 1493242 | 17976.7 |
| gdp-l-fucose synthase | DW935_06350 | Not Available | Negative | 1493437 - 1494513 | 40525.7 |
| gdp-mannose 4,6-dehydratase | DW935_06355 | Not Available | Negative | 1494513 - 1495595 | 41218.5 |
| mannose-1-phosphate guanylyltransferase | DW935_06360 | Not Available | Negative | 1495771 - 1496835 | 40506.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

