Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antibiotic biosynthesis monooxygenase | DW935_05905 | Not Available | Positive | 1396591 - 1396866 | 10430.6 |
| duf340 domain-containing protein | DW935_05910 | Not Available | Positive | 1397423 - 1397710 | 10298.2 |
| lysine exporter lyso family protein | DW935_05915 | Not Available | Positive | 1397700 - 1398320 | 22075.5 |
| abc transporter permease | DW935_05920 | Not Available | Negative | 1398667 - 1399911 | 46875.6 |
| pyridoxal phosphate-dependent aminotransferase | DW935_05925 | Not Available | Negative | 1399913 - 1401115 | 44969.1 |
| fucose isomerase | DW935_05930 | Not Available | Positive | 1401281 - 1402516 | 46160.3 |
| duf4494 domain-containing protein | DW935_05935 | Not Available | Positive | 1402612 - 1403094 | 18209.6 |
| yggs family pyridoxal phosphate-dependent enzyme | DW935_05940 | Not Available | Positive | 1403128 - 1403796 | 25398.4 |
| dihydroorotate dehydrogenase-like protein | DW935_05945 | Not Available | Positive | 1403810 - 1404784 | 35581.3 |
| long-chain fatty acid--coa ligase | DW935_05950 | Not Available | Positive | 1404961 - 1406619 | 62504.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

