Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formyltetrahydrofolate deformylase | DW935_05855 | Not Available | Positive | 1387405 - 1388262 | 33273.6 |
| imidazole glycerol phosphate synthase subunit hish | DW935_05860 | Not Available | Positive | 1388262 - 1388852 | 22270.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DW935_05865 | Not Available | Positive | 1388894 - 1389613 | 26636.3 |
| imidazole glycerol phosphate synthase subunit hisf | DW935_05870 | Not Available | Positive | 1389623 - 1390378 | 27219.5 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DW935_05875 | Not Available | Positive | 1390543 - 1391154 | 23137.6 |
| atp-binding cassette domain-containing protein | DW935_05880 | Not Available | Positive | 1391159 - 1391914 | 28405.2 |
| aspartate kinase | DW935_05885 | Not Available | Positive | 1392022 - 1393341 | 49296.1 |
| diaminopimelate decarboxylase | DW935_05890 | Not Available | Positive | 1393449 - 1394609 | 42749.4 |
| hypothetical protein | DW935_05895 | Not Available | Negative | 1394674 - 1395180 | 19772.7 |
| glycosyltransferase | DW935_05900 | Not Available | Positive | 1395385 - 1396542 | 44788.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

