Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome small subunit-dependent gtpase a | DW935_05745 | Not Available | Positive | 1357368 - 1358300 | 35098.8 |
| m20/m25/m40 family metallo-hydrolase | DW935_05750 | Not Available | Positive | 1358314 - 1359333 | 38293.7 |
| efflux rnd transporter periplasmic adaptor subunit | DW935_05755 | Not Available | Positive | 1359420 - 1360496 | 39686.0 |
| acrb/acrd/acrf family protein | DW935_05760 | Not Available | Positive | 1360516 - 1363551 | 112074.0 |
| tolc family protein | DW935_05765 | Not Available | Positive | 1363548 - 1364867 | 50562.7 |
| amino acid permease | DW935_05770 | Not Available | Positive | 1364956 - 1366614 | 59786.5 |
| alpha-n-acetylglucosaminidase | DW935_05775 | Not Available | Negative | 1366787 - 1368943 | 82890.6 |
| fumarate hydratase | DW935_05780 | Not Available | Negative | 1369046 - 1370689 | 60487.7 |
| coce/nond family hydrolase | DW935_05785 | Not Available | Positive | 1370828 - 1372735 | 73920.9 |
| duf4954 family protein | DW935_05790 | Not Available | Negative | 1372883 - 1374868 | 74507.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

