Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin--[acetyl-coa-carboxylase] ligase | DW935_05695 | Not Available | Positive | 1342547 - 1343314 | 29272.0 |
| peptidase s41 | DW935_05700 | Not Available | Negative | 1343311 - 1344750 | 54094.4 |
| mate family efflux transporter | DW935_05705 | Not Available | Positive | 1344909 - 1346234 | 48941.7 |
| ump kinase | DW935_05710 | Not Available | Positive | 1346273 - 1346983 | 25575.2 |
| glycoside hydrolase family 88 protein | DW935_05715 | Not Available | Positive | 1347241 - 1348479 | 47229.2 |
| hypothetical protein | DW935_05720 | Not Available | Positive | 1348534 - 1350642 | 79949.1 |
| duf4450 domain-containing protein | DW935_05725 | Not Available | Positive | 1350667 - 1353924 | 121671.0 |
| histidine phosphatase family protein | DW935_05730 | Not Available | Negative | 1353947 - 1354465 | 19475.5 |
| aaa family atpase | DW935_05735 | Not Available | Negative | 1354868 - 1356448 | 61227.0 |
| ribosome-recycling factor | DW935_05740 | Not Available | Positive | 1356687 - 1357247 | 20738.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

