Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DW935_05495 | Not Available | Positive | 1300065 - 1301327 | 47706.3 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DW935_05500 | Not Available | Positive | 1301429 - 1303699 | 86308.0 |
| merr family transcriptional regulator | DW935_05505 | Not Available | Negative | 1303791 - 1304138 | 13742.9 |
| m23 family peptidase | DW935_05510 | Not Available | Negative | 1304172 - 1305140 | 36405.9 |
| alanine--trna ligase | DW935_05515 | Not Available | Positive | 1305280 - 1307898 | 97427.7 |
| duf2075 domain-containing protein | DW935_05520 | Not Available | Negative | 1308220 - 1309638 | 53950.6 |
| hypothetical protein | DW935_05525 | Not Available | Positive | 1309736 - 1310422 | 25516.8 |
| duf3822 family protein | DW935_05530 | Not Available | Positive | 1310425 - 1311249 | 32356.9 |
| methyltransferase domain-containing protein | DW935_05535 | Not Available | Positive | 1311240 - 1311800 | 21359.3 |
| cardiolipin synthase | DW935_05540 | Not Available | Negative | 1311769 - 1313205 | 55420.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

