Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3872 domain-containing protein | DW935_04965 | Not Available | Negative | 1187815 - 1188318 | 19169.8 |
| dna primase | DW935_04970 | Not Available | Negative | 1188315 - 1189217 | 33727.4 |
| conjugal transfer protein trao | DW935_04975 | Not Available | Negative | 1189225 - 1189800 | 21037.4 |
| conjugative transposon protein tran | DW935_04980 | Not Available | Negative | 1189803 - 1190789 | 37189.9 |
| conjugative transposon protein tram | DW935_04985 | Not Available | Negative | 1190824 - 1192176 | 49068.3 |
| conjugative transposon protein traj | DW935_04995 | Not Available | Negative | 1193127 - 1194131 | 37157.8 |
| duf4141 domain-containing protein | DW935_05000 | Not Available | Negative | 1194135 - 1194764 | 24177.4 |
| duf3876 domain-containing protein | DW935_05005 | Not Available | Negative | 1194788 - 1195168 | 14375.4 |
| trag family conjugative transposon atpase | DW935_05010 | Not Available | Negative | 1195209 - 1197713 | 96398.6 |
| duf4133 domain-containing protein | DW935_05015 | Not Available | Negative | 1197710 - 1198042 | 12696.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

