Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DW935_04860 | Not Available | Positive | 1170694 - 1174011 | 122705.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_04865 | Not Available | Positive | 1174032 - 1175522 | 55759.7 |
| thioredoxin | DW935_04870 | Not Available | Positive | 1175541 - 1176707 | 44546.2 |
| tlpa family protein disulfide reductase | DW935_04875 | Not Available | Positive | 1176709 - 1178058 | 50412.1 |
| sodium ion-translocating decarboxylase subunit beta | DW935_04880 | Not Available | Negative | 1178254 - 1179489 | 44261.9 |
| oxaloacetate decarboxylase | DW935_04885 | Not Available | Negative | 1179489 - 1181351 | 68971.7 |
| oxaloacetate decarboxylase | DW935_04890 | Not Available | Negative | 1181382 - 1181633 | 8725.21 |
| nitroreductase | DW935_04895 | Not Available | Negative | 1181901 - 1182401 | 18878.7 |
| hypothetical protein | DW935_04900 | Not Available | Negative | 1182567 - 1182788 | 8619.87 |
| hypothetical protein | DW935_04905 | Not Available | Positive | 1182886 - 1183296 | 14889.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

