Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglucosamine mutase | DW935_00050 | Not Available | Negative | 13390 - 14778 | 50475.7 |
| duf4827 domain-containing protein | DW935_00055 | Not Available | Negative | 14775 - 15410 | 24137.5 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DW935_00060 | Not Available | Negative | 15493 - 16533 | 39348.3 |
| comec family competence protein | DW935_00065 | Not Available | Negative | 16583 - 18502 | 72592.5 |
| ribulose-phosphate 3-epimerase | DW935_00070 | Not Available | Negative | 18549 - 19202 | 23913.3 |
| porin family protein | DW935_00075 | Not Available | Negative | 19278 - 20573 | 48026.5 |
| sigma-70 family rna polymerase sigma factor | DW935_00080 | Not Available | Negative | 20576 - 21118 | 20885.1 |
| hypothetical protein | DW935_00085 | Not Available | Positive | 21276 - 22058 | 28969.6 |
| methionyl-trna formyltransferase | DW935_00090 | Not Available | Negative | 22131 - 23105 | 36638.5 |
| chloride channel protein | DW935_00095 | Not Available | Negative | 23119 - 24912 | 66651.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

