Parabacteroides merdae strain AM48-24BH

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM48-24BH is a Gram-negative, anaerobic, rod-shaped bacterium primarily inhabiting the gastrointestinal tract of humans. This organism is part of the diverse gut microbiomes found in Homo sapiens, contributing to the complex ecosystem of gut flora. A notable characteristic of P. merdae AM48-24BH is its flagella presence, which may play a role in its motility within the viscous environment of the gut. The strain is characterized by having a single replicon, indicating a streamlined genetic structure that may facilitate its adaptation to the gut environment. In terms of health implications, P. merdae has been associated with the condition known as OSA (Obstructive Sleep Apnea). This connection underscores the potential influence of gut microbiota on broader health outcomes, particularly in relation to sleep disorders. The presence of specific strains within the gut microbiome, such as P. merdae, may reflect or contribute to the physiological states that impact overall health. The accession number for this strain is QSEO00000000.1, providing a reference point for further research and genomic analysis. Understanding the role of Parabacteroides merdae in the gut microbiome can offer insights into its functions and interactions within this critical ecosystem, highlighting the intricate relationships between gut bacteria and human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain AM48-24BH

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain AM48-24BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM48-24BH AM48-24BH.Scaf131, whole

Gene Summary

Adenine Count

1260690 bp

Thymine Count

1284508 bp

Guanine Count

1078856 bp

Cytosine Count

1052974 bp

Genome Length

4677028 bp

Protein-coding Genes

3358 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive23259 - 23370Not Available
site-specific integraseDW973_00125Not AvailablePositive23915 - 2483835021.1
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdDW973_00135Not AvailablePositive25542 - 2658538156.2
exo-alpha-sialidaseDW973_00140Not AvailablePositive26656 - 2808352705.4
hypothetical proteinDW973_00145Not AvailablePositive28171 - 2889026849.1
isoprenyl transferaseDW973_00150Not AvailablePositive28908 - 2965128126.7
outer membrane protein assembly factor bamaDW973_00155Not AvailablePositive29665 - 32352102356.0
omph family outer membrane proteinDW973_00160Not AvailablePositive32561 - 3307619828.1
omph family outer membrane proteinDW973_00165Not AvailablePositive33149 - 3364619162.4
glutamate racemaseDW973_00170Not AvailablePositive33800 - 3463631062.4

Displaying genes 21 – 30 of 3425 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total