Parabacteroides merdae strain AM48-24BH

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM48-24BH is a Gram-negative, anaerobic bacterium, which suggests it thrives in environments devoid of oxygen. This strain is part of the genus Parabacteroides, which is known for its association with the human gut microbiome. The anaerobic nature of P. merdae indicates that it likely plays a role in the fermentation processes typical of gut environments, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. As a member of the Bacteroidetes phylum, P. merdae may also engage in syntrophic relationships with other gut microorganisms, facilitating nutrient exchange and metabolic cooperation. The strain's Gram-negative status implies the presence of an outer membrane, which may provide advantages in resisting antibiotics compared to Gram-positive bacteria. Understanding the specific metabolic pathways and interactions of Parabacteroides merdae strain AM48-24BH within the gut ecosystem could provide insights into its role in maintaining gut health and its potential applications in probiotics or microbiome research. Furthermore, studying this strain could shed light on how anaerobic bacteria contribute to the complex interplay of microbial communities in the human gastrointestinal tract, emphasizing the importance of anaerobes in overall gut functionality and health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM48-24BH

Accession NumberQSEO00000000.1

Gene Summary

Adenine Count

1260690 bp

Thymine Count

1284508 bp

Guanine Count

1078856 bp

Cytosine Count

1052974 bp

Genome Length

4677028 bp

Protein-coding Genes

3358 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
srpbcc family proteinDW973_00060Not Available-11640 - 1205015659.0
orotate phosphoribosyltransferaseDW973_00065Not Available-12057 - 1269823433.1
comf family proteinDW973_00070Not Available-12815 - 1350725812.5
recx family transcriptional regulatorDW973_00075Not Available-13482 - 1397319046.7
peptide chain release factor n(5)-glutamine methyltransferaseDW973_00080Not Available-13970 - 1481832532.3
type i restriction endonuclease subunit rDW973_00090Not Available+15327 - 18146109175.0
giy-yig nuclease family proteinDW973_00095Not Available+18157 - 1885527084.3
type i restriction-modification system subunit mDW973_00100Not Available+18860 - 2041358708.6
cell filamentation protein ficDW973_00105Not Available+20432 - 2148740575.3
hypothetical proteinDW973_00115Not Available-22716 - 2323719993.3

Displaying genes 11 – 20 of 3425 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites