Phocaeicola vulgatus strain AM51-1

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM51-1 is a Gram-positive, anaerobic, rod-shaped bacterium that is part of the human microbiota. This strain is characterized by its cell arrangement in singles, and it lacks mobility, as indicated by the absence of flagella. It is a mesophilic organism, thriving in moderate temperature ranges conducive to its growth. Strain AM51-1 has a unique genomic configuration with a single replicon and possesses two membranes, which is typical for certain Gram-positive bacteria. Its ecological role is classified as free-living, yet it is associated with human hosts, specifically Homo sapiens. This relationship suggests that P. vulgatus may play a role in the complex microbial communities within the human gastrointestinal tract. The presence of P. vulgatus in the human microbiome highlights its potential significance in maintaining gut health and contributing to the overall balance of microbial populations. Given that it is an anaerobic organism, it likely participates in metabolic processes that are crucial for digestion and nutrient absorption. The study of this strain can provide insights into the functional roles of gut bacteria and their interactions with human health. The accession number for this strain is QSEC00000000.1, which allows for further investigation and research into its characteristics and functions within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM51-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM51-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM51-1 AM51-1.Scaf142, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3582 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
enoyl-acp reductaseDW990_05220Not AvailableNegative1299425 - 130028231326.5
glycoside hydrolase family 28 proteinDW990_05225Not AvailablePositive1300659 - 130227859146.7
duf4861 domain-containing proteinDW990_05230Not AvailablePositive1302417 - 130363145689.1
glycoside hydrolaseDW990_05235Not AvailablePositive1303645 - 130530961567.8
sigma-70 family rna polymerase sigma factorDW990_05240Not AvailablePositive1305410 - 130599423217.7
susc/raga family tonb-linked outer membrane proteinDW990_05250Not AvailablePositive1307276 - 1310593122565.0
ragb/susd family nutrient uptake outer membrane proteinDW990_05255Not AvailablePositive1310614 - 131210455759.7
tlpa family protein disulfide reductaseDW990_05265Not AvailablePositive1313289 - 131463850412.1
sodium ion-translocating decarboxylase subunit betaDW990_05270Not AvailableNegative1314834 - 131606944261.9
oxaloacetate decarboxylaseDW990_05275Not AvailableNegative1316069 - 131793168972.7

Displaying genes 851 – 860 of 3650 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.