Phocaeicola vulgatus strain AM51-1

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM51-1 is a Gram-positive, anaerobic, rod-shaped bacterium that is part of the human microbiota. This strain is characterized by its cell arrangement in singles, and it lacks mobility, as indicated by the absence of flagella. It is a mesophilic organism, thriving in moderate temperature ranges conducive to its growth. Strain AM51-1 has a unique genomic configuration with a single replicon and possesses two membranes, which is typical for certain Gram-positive bacteria. Its ecological role is classified as free-living, yet it is associated with human hosts, specifically Homo sapiens. This relationship suggests that P. vulgatus may play a role in the complex microbial communities within the human gastrointestinal tract. The presence of P. vulgatus in the human microbiome highlights its potential significance in maintaining gut health and contributing to the overall balance of microbial populations. Given that it is an anaerobic organism, it likely participates in metabolic processes that are crucial for digestion and nutrient absorption. The study of this strain can provide insights into the functional roles of gut bacteria and their interactions with human health. The accession number for this strain is QSEC00000000.1, which allows for further investigation and research into its characteristics and functions within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM51-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM51-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM51-1 AM51-1.Scaf142, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3582 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-isopropylmalate synthaseDW990_20390Not AvailablePositive4679171 - 468066754450.0
3-isopropylmalate dehydratase large subunitDW990_20395Not AvailablePositive4680685 - 468206750051.1
3-isopropylmalate dehydratase small subunitDW990_20400Not AvailablePositive4682081 - 468267722407.5
2-isopropylmalate synthaseDW990_20405Not AvailablePositive4682683 - 468420356824.1
3-isopropylmalate dehydrogenaseDW990_20410Not AvailablePositive4684297 - 468535839089.9
ahpc/tsa family proteinDW990_20415Not AvailablePositive4685490 - 468663542891.5
peptide-methionine (s)-s-oxide reductaseDW990_20420Not AvailableNegative4686704 - 468718918625.0
tetratricopeptide repeat proteinDW990_20425Not AvailablePositive4687306 - 468816032582.4
dna helicase recqDW990_20430Not AvailableNegative4688258 - 469007569144.0
arac family transcriptional regulatorDW990_20435Not AvailablePositive4690407 - 469087418149.8

Displaying genes 3321 – 3330 of 3650 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.