Phocaeicola vulgatus strain AM51-1

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM51-1 is a Gram-positive, anaerobic, rod-shaped bacterium that is part of the human microbiota. This strain is characterized by its cell arrangement in singles, and it lacks mobility, as indicated by the absence of flagella. It is a mesophilic organism, thriving in moderate temperature ranges conducive to its growth. Strain AM51-1 has a unique genomic configuration with a single replicon and possesses two membranes, which is typical for certain Gram-positive bacteria. Its ecological role is classified as free-living, yet it is associated with human hosts, specifically Homo sapiens. This relationship suggests that P. vulgatus may play a role in the complex microbial communities within the human gastrointestinal tract. The presence of P. vulgatus in the human microbiome highlights its potential significance in maintaining gut health and contributing to the overall balance of microbial populations. Given that it is an anaerobic organism, it likely participates in metabolic processes that are crucial for digestion and nutrient absorption. The study of this strain can provide insights into the functional roles of gut bacteria and their interactions with human health. The accession number for this strain is QSEC00000000.1, which allows for further investigation and research into its characteristics and functions within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM51-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM51-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM51-1 AM51-1.Scaf142, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3582 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorDW990_15225Not AvailablePositive3542716 - 3545451103843.0
duf4876 domain-containing proteinDW990_15230Not AvailablePositive3545473 - 354668744732.5
hypothetical proteinDW990_15235Not AvailablePositive3546702 - 354827658446.7
hypothetical proteinDW990_15240Not AvailablePositive3548297 - 354888120951.8
peptidaseDW990_15245Not AvailablePositive3548865 - 354944021635.8
abc transporter atp-binding proteinDW990_15250Not AvailablePositive3549468 - 355035533841.0
hypothetical proteinDW990_15255Not AvailablePositive3550379 - 355105025628.6
duf4857 domain-containing proteinDW990_15260Not AvailablePositive3551083 - 355211139445.4
gggtgrt proteinDW990_15265Not AvailableNegative3552680 - 355369035757.9
hypothetical proteinDW990_15270Not AvailableNegative3553709 - 355441025285.6

Displaying genes 2471 – 2480 of 3650 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.