Phocaeicola vulgatus strain AM51-1

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM51-1 is a Gram-positive, anaerobic, rod-shaped bacterium that is part of the human microbiota. This strain is characterized by its cell arrangement in singles, and it lacks mobility, as indicated by the absence of flagella. It is a mesophilic organism, thriving in moderate temperature ranges conducive to its growth. Strain AM51-1 has a unique genomic configuration with a single replicon and possesses two membranes, which is typical for certain Gram-positive bacteria. Its ecological role is classified as free-living, yet it is associated with human hosts, specifically Homo sapiens. This relationship suggests that P. vulgatus may play a role in the complex microbial communities within the human gastrointestinal tract. The presence of P. vulgatus in the human microbiome highlights its potential significance in maintaining gut health and contributing to the overall balance of microbial populations. Given that it is an anaerobic organism, it likely participates in metabolic processes that are crucial for digestion and nutrient absorption. The study of this strain can provide insights into the functional roles of gut bacteria and their interactions with human health. The accession number for this strain is QSEC00000000.1, which allows for further investigation and research into its characteristics and functions within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM51-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM51-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM51-1 AM51-1.Scaf142, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3582 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
asparagine--trna ligaseDW990_11415Not AvailableNegative2745589 - 274699253432.1
pseudouridine synthaseDW990_11420Not AvailableNegative2747015 - 274847856068.8
adenylosuccinate lyaseDW990_11425Not AvailableNegative2748554 - 274990050932.1
mate family efflux transporterDW990_11430Not AvailableNegative2749994 - 275134349665.5
aminopeptidaseDW990_11435Not AvailablePositive2751506 - 275299954985.9
gntr family transcriptional regulatorDW990_11440Not AvailableNegative2753097 - 275346214368.4
hypothetical proteinDW990_11445Not AvailableNegative2753459 - 275434933985.2
abc transporter atp-binding proteinDW990_11450Not AvailableNegative2754364 - 275520631481.2
hypothetical proteinDW990_11455Not AvailableNegative2755390 - 275680553376.9
phosphate abc transporter substrate-binding proteinDW990_11460Not AvailableNegative2756829 - 275777334318.6

Displaying genes 1831 – 1840 of 3650 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.