Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM51-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
3582 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan editing factor pgef | DW990_11130 | Not Available | Negative | 2686105 - 2686887 | 28753.3 |
| hypoxanthine phosphoribosyltransferase | DW990_11145 | Not Available | Negative | 2688792 - 2689328 | 20092.5 |
| nad(p)h-hydrate dehydratase | DW990_11150 | Not Available | Positive | 2689448 - 2690983 | 56163.4 |
| duf4831 family protein | DW990_11155 | Not Available | Positive | 2691020 - 2692069 | 38630.6 |
| duf3332 domain-containing protein | DW990_11165 | Not Available | Positive | 2693712 - 2694263 | 19885.5 |
| duf4934 domain-containing protein | DW990_11170 | Not Available | Positive | 2694344 - 2695576 | 46092.9 |
| tolc family protein | DW990_11175 | Not Available | Negative | 2695657 - 2697030 | 50275.8 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DW990_11180 | Not Available | Negative | 2697027 - 2700242 | 117341.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW990_11185 | Not Available | Negative | 2700251 - 2701366 | 40220.4 |
| arac family transcriptional regulator | DW990_11190 | Not Available | Positive | 2701514 - 2702344 | 32377.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

