Phocaeicola dorei strain OF04-10BH

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei strain OF04-10BH is a Gram-negative, non-motile, rod-shaped bacterium classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. This strain is an anaerobe, meaning it thrives in environments devoid of oxygen, which aligns with its habitat being multiple, though specific habitats are not detailed. P. dorei has a single replicon and does not undergo sporulation, suggesting a stable genomic structure and a reliance on other forms of survival in adverse conditions rather than spore formation. The optimal growth temperature for this strain is 37°C, placing it in the mesophilic temperature range, which is typical for many bacteria that inhabit warm environments, including those associated with the human microbiome. The presence of flagella, despite the strain's non-motility, may indicate a potential for twitching or other forms of movement at a micro-scale, although the exact implications of this feature for its ecology are not specified. Overall, P. dorei strain OF04-10BH's adaptations, including its anaerobic lifestyle and energy acquisition strategies, suggest it may play a role in nutrient cycling in anaerobic environments, contributing to the breakdown of organic matter in various ecological niches. Its presence in multiple habitats underscores its potential ecological versatility and importance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
Strainstrain OF04-10BH

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei strain OF04-10BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain OF04-10BH OF04-10BH.Scaf76, whole genome

Gene Summary

Adenine Count

1595049 bp

Thymine Count

1627393 bp

Guanine Count

1165415 bp

Cytosine Count

1140111 bp

Genome Length

5528270 bp

Protein-coding Genes

4437 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s46 family peptidaseDXA69_18010Not AvailableNegative4361376 - 436356282451.5
s46 family peptidaseDXA69_18015Not AvailableNegative4363562 - 436572781214.1
duf4369 domain-containing proteinDXA69_18020Not AvailablePositive4365942 - 436661925357.7
1-acyl-sn-glycerol-3-phosphate acyltransferaseDXA69_18025Not AvailableNegative4366633 - 436739128659.5
metallophosphoesteraseDXA69_18030Not AvailableNegative4367431 - 436859143688.3
5-methyltetrahydrofolate--homocysteine methyltransferaseDXA69_18035Not AvailableNegative4368606 - 436949333435.0
dihydroorotaseDXA69_18040Not AvailableNegative4369490 - 437083049599.3
polyprenol monophosphomannose synthaseDXA69_18045Not AvailableNegative4370827 - 437157628432.6
porin family proteinDXA69_18050Not AvailableNegative4371729 - 437235523497.7
duf4136 domain-containing proteinDXA69_18055Not AvailableNegative4372397 - 437303524035.1

Displaying genes 3481 – 3490 of 4515 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.