Phocaeicola dorei strain OF04-10BH

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei strain OF04-10BH is a Gram-negative, non-sporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and requires anaerobic conditions for growth. This strain thrives optimally at 37.0°C, indicating a preference for temperatures that are consistent with mammalian body temperatures, which may suggest a potential association with warm-blooded hosts or environments influenced by such organisms. The habitat of Phocaeicola dorei strain OF04-10BH is described as multiple, indicating a versatile ecological niche, although specific environments are not detailed. Its anaerobic requirement suggests that this microbe may be involved in anaerobic fermentation processes, contributing to nutrient cycling in environments such as the gastrointestinal tract of animals or other anoxic habitats. Given its metabolic capabilities and growth conditions, Phocaeicola dorei strain OF04-10BH may play a role in the breakdown of complex organic materials under anaerobic conditions, which is crucial for maintaining the balance of microbial communities in its habitat. Understanding the ecological roles of such bacteria can provide insights into the functioning of anaerobic ecosystems and their contributions to overall microbial diversity and activity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei strain OF04-10BH
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain OF04-10BH

Accession NumberQSCE00000000.1

Gene Summary

Adenine Count

1595049 bp

Thymine Count

1627393 bp

Guanine Count

1165415 bp

Cytosine Count

1140111 bp

Genome Length

5528270 bp

Protein-coding Genes

4437 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
recx family transcriptional regulatorDXA69_01260Not Available-341103 - 34158818844.6
peptide chain release factor n(5)-glutamine methyltransferaseDXA69_01265Not Available-341590 - 34242631727.3
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdDXA69_01270Not Available+342471 - 34353840275.2
hypothetical proteinDXA69_01275Not Available+343651 - 34504852235.9
isoprenyl transferaseDXA69_01280Not Available+345082 - 34581328131.5
outer membrane protein assembly factor bamaDXA69_01285Not Available+345825 - 348464100661.0
omph family outer membrane proteinDXA69_01290Not Available+348485 - 34900018967.6
omph family outer membrane proteinDXA69_01295Not Available+349058 - 34956119288.3
glutamate racemaseDXA69_01300Not Available+349664 - 35050931328.9
pyridoxamine kinaseDXA69_01305Not Available+350566 - 35143832875.6

Displaying genes 251 – 260 of 4515 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites