Phocaeicola dorei strain OF04-10BH

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei strain OF04-10BH is a Gram-negative, non-motile, rod-shaped bacterium classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. This strain is an anaerobe, meaning it thrives in environments devoid of oxygen, which aligns with its habitat being multiple, though specific habitats are not detailed. P. dorei has a single replicon and does not undergo sporulation, suggesting a stable genomic structure and a reliance on other forms of survival in adverse conditions rather than spore formation. The optimal growth temperature for this strain is 37°C, placing it in the mesophilic temperature range, which is typical for many bacteria that inhabit warm environments, including those associated with the human microbiome. The presence of flagella, despite the strain's non-motility, may indicate a potential for twitching or other forms of movement at a micro-scale, although the exact implications of this feature for its ecology are not specified. Overall, P. dorei strain OF04-10BH's adaptations, including its anaerobic lifestyle and energy acquisition strategies, suggest it may play a role in nutrient cycling in anaerobic environments, contributing to the breakdown of organic matter in various ecological niches. Its presence in multiple habitats underscores its potential ecological versatility and importance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
Strainstrain OF04-10BH

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei strain OF04-10BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain OF04-10BH OF04-10BH.Scaf76, whole genome

Gene Summary

Adenine Count

1595049 bp

Thymine Count

1627393 bp

Guanine Count

1165415 bp

Cytosine Count

1140111 bp

Genome Length

5528270 bp

Protein-coding Genes

4437 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyrophosphataseDXA69_12900Not AvailableNegative3124296 - 312461612299.6
d-tyrosyl-trna(tyr) deacylaseDXA69_12905Not AvailableNegative3124616 - 312506816634.2
excinuclease abc subunit uvrcDXA69_12910Not AvailableNegative3125224 - 312704469897.8
adenine phosphoribosyltransferaseDXA69_12915Not AvailableNegative3127398 - 312792219179.5
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgDXA69_12920Not AvailableNegative3127982 - 312985369609.1
flotillin family proteinDXA69_12925Not AvailableNegative3130000 - 313170062531.3
hypothetical proteinDXA69_12930Not AvailableNegative3131726 - 313225920202.4
rrna maturation rnase ybeyDXA69_12935Not AvailableNegative3132494 - 313291015867.9
tolc family proteinDXA69_12940Not AvailablePositive3133081 - 313433448055.2
efflux rnd transporter periplasmic adaptor subunitDXA69_12945Not AvailablePositive3134359 - 313545640665.4

Displaying genes 2491 – 2500 of 4515 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.