Phocaeicola dorei strain OF04-10BH

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei strain OF04-10BH is a Gram-negative, non-motile, rod-shaped bacterium classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. This strain is an anaerobe, meaning it thrives in environments devoid of oxygen, which aligns with its habitat being multiple, though specific habitats are not detailed. P. dorei has a single replicon and does not undergo sporulation, suggesting a stable genomic structure and a reliance on other forms of survival in adverse conditions rather than spore formation. The optimal growth temperature for this strain is 37°C, placing it in the mesophilic temperature range, which is typical for many bacteria that inhabit warm environments, including those associated with the human microbiome. The presence of flagella, despite the strain's non-motility, may indicate a potential for twitching or other forms of movement at a micro-scale, although the exact implications of this feature for its ecology are not specified. Overall, P. dorei strain OF04-10BH's adaptations, including its anaerobic lifestyle and energy acquisition strategies, suggest it may play a role in nutrient cycling in anaerobic environments, contributing to the breakdown of organic matter in various ecological niches. Its presence in multiple habitats underscores its potential ecological versatility and importance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
Strainstrain OF04-10BH

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei strain OF04-10BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain OF04-10BH OF04-10BH.Scaf76, whole genome

Gene Summary

Adenine Count

1595049 bp

Thymine Count

1627393 bp

Guanine Count

1165415 bp

Cytosine Count

1140111 bp

Genome Length

5528270 bp

Protein-coding Genes

4437 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susd family outer membrane lipoprotein nanuDXA69_06770Not AvailablePositive1696822 - 169832456882.2
sialidaseDXA69_06775Not AvailablePositive1698457 - 170009760343.4
beta-n-acetylhexosaminidaseDXA69_06780Not AvailablePositive1700101 - 170210776958.4
sialate o-acetylesteraseDXA69_06785Not AvailablePositive1702109 - 170277425163.9
sialate o-acetylesteraseDXA69_06790Not AvailablePositive1702771 - 170483477815.5
glycoside hydrolase family 2 proteinDXA69_06795Not AvailablePositive1704861 - 170742898631.7
beta-n-acetylhexosaminidaseDXA69_06800Not AvailablePositive1707445 - 170976986818.1
cyclically-permuted mutarotase family proteinDXA69_06805Not AvailablePositive1709864 - 171099140419.5
beta-n-acetylhexosaminidaseDXA69_06810Not AvailablePositive1710988 - 171304276941.7
glycoside hydrolase family 92 proteinDXA69_06815Not AvailablePositive1713069 - 171532185557.6

Displaying genes 1301 – 1310 of 4515 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.