Agathobacter rectalis strain AF06-19

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis strain AF06-19 is a Gram-positive, rod-shaped bacterium classified as a chemoheterotroph, meaning it derives its energy from organic compounds. This strain is an anaerobe, thriving in environments devoid of oxygen, and is known to be free-living, indicating it does not rely on a host for survival, although it is associated with Homo sapiens. The optimal growth temperature for A. rectalis strain AF06-19 is 37°C, which falls within the mesophilic temperature range. This suggests that the organism is well-adapted to the human body temperature, potentially playing a role in human gastrointestinal microbiota. A. rectalis strain AF06-19 has a single replicon and one membrane, indicating a relatively simple cellular organization. It is nonsporulating, which means it does not form spores to survive adverse conditions. The strain is non-motile and possesses flagella, though its lack of mobility suggests that it relies on other means for dispersal within its habitat. The presence of A. rectalis in various habitats, particularly within the human gut, highlights its potential ecological role in maintaining gut health and contributing to the complex microbial community. Its ability to utilize organic compounds may be significant in nutrient cycling and interaction with other gut microbiota, emphasizing its importance in the broader ecological context of the gastrointestinal environment.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
Strainstrain AF06-19

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis strain AF06-19
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Agathobacter rectalis strain AF06-19 AF06-19.Scaf45, whole genome

Gene Summary

Adenine Count

970792 bp

Thymine Count

968786 bp

Guanine Count

669380 bp

Cytosine Count

683090 bp

Genome Length

3292516 bp

Protein-coding Genes

2982 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-70 family rna polymerase sigma factorDWV45_12515Not AvailablePositive2599778 - 260032621811.5
hypothetical proteinDWV45_12520Not AvailablePositive2600323 - 260111729044.1
hypothetical proteinDWV45_12530Not AvailablePositive2601235 - 260187322924.6
hypothetical proteinDWV45_12540Not AvailablePositive2603345 - 260386019668.6
hypothetical proteinDWV45_12545Not AvailablePositive2603865 - 260435618519.5
fpra family a-type flavoproteinDWV45_12550Not AvailablePositive2604521 - 260567843193.6
duf4445 domain-containing proteinDWV45_12555Not AvailablePositive2605802 - 260744258749.3
pyruvate kinaseDWV45_12560Not AvailablePositive2607564 - 260897651968.1
alanine:cation symporter family proteinDWV45_12565Not AvailablePositive2609516 - 261094350999.5
histidine phosphatase family proteinDWV45_12570Not AvailablePositive2610946 - 261150021469.5

Displaying genes 2471 – 2480 of 3124 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.