Holdemanella biformis strain AF10-31

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF10-31 is a bacterium primarily found in feces, indicating its association with the intestinal microbiota of its host. This strain has been identified within Homo sapiens, suggesting a potential role in human gut health or disease. Genetically, Holdemanella biformis strain AF10-31 is characterized by having a single replicon. This feature is relevant for understanding its genetic stability and replication mechanisms, which can influence its adaptability and survival in the gastrointestinal tract. The accession number for this strain is QSAT00000000.1, which provides a reference for researchers looking to access its genomic data for further study. In terms of ecological significance, the presence of Holdemanella biformis in human feces may imply its involvement in the complex interactions within the gut microbiome. It could play a role in digestion, metabolism, or even the modulation of immune responses. Understanding the specific functions and interactions of this strain within the gut environment could provide insights into its contributions to human health and the maintenance of microbial diversity.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF10-31

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF10-31 AF10-31.Scaf105, whole genome

Gene Summary

Adenine Count

820351 bp

Thymine Count

835766 bp

Guanine Count

430183 bp

Cytosine Count

431129 bp

Genome Length

2518124 bp

Protein-coding Genes

2385 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseDWV56_01565Not AvailablePositive315893 - 31717647718.7
class a beta-lactamase-related serine hydrolaseDWV56_01570Not AvailablePositive317221 - 31898466719.4
merr family transcriptional regulatorDWV56_01575Not AvailableNegative318971 - 31976231658.9
mate family efflux transporterDWV56_01580Not AvailablePositive319819 - 32111148021.3
aquaporin family proteinDWV56_01585Not AvailableNegative321159 - 32186925582.8
nickel-dependent lactate racemaseDWV56_01590Not AvailableNegative321888 - 32316546482.0
crp/fnr family transcriptional regulatorDWV56_01595Not AvailablePositive323302 - 32395825484.0
ecf transporter s componentDWV56_01600Not AvailablePositive324014 - 32455619577.6
hypothetical proteinDWV56_01605Not AvailableNegative324611 - 32498814764.2
response regulatorDWV56_01610Not AvailableNegative324969 - 32715882780.7

Displaying genes 311 – 320 of 2445 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.