Holdemanella biformis strain AF10-31

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF10-31 is a bacterium primarily found in feces, indicating its association with the intestinal microbiota of its host. This strain has been identified within Homo sapiens, suggesting a potential role in human gut health or disease. Genetically, Holdemanella biformis strain AF10-31 is characterized by having a single replicon. This feature is relevant for understanding its genetic stability and replication mechanisms, which can influence its adaptability and survival in the gastrointestinal tract. The accession number for this strain is QSAT00000000.1, which provides a reference for researchers looking to access its genomic data for further study. In terms of ecological significance, the presence of Holdemanella biformis in human feces may imply its involvement in the complex interactions within the gut microbiome. It could play a role in digestion, metabolism, or even the modulation of immune responses. Understanding the specific functions and interactions of this strain within the gut environment could provide insights into its contributions to human health and the maintenance of microbial diversity.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF10-31

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF10-31 AF10-31.Scaf105, whole genome

Gene Summary

Adenine Count

820351 bp

Thymine Count

835766 bp

Guanine Count

430183 bp

Cytosine Count

431129 bp

Genome Length

2518124 bp

Protein-coding Genes

2385 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
group ii intron reverse transcriptase/maturaseDWV56_12525Not AvailablePositive2495452 - 249671750427.4
duf1893 domain-containing proteinDWV56_12530Not AvailableNegative2496935 - 249734815701.1
aldo/keto reductaseDWV56_12535Not AvailableNegative2497332 - 249843542421.1
hypothetical proteinDWV56_12545Not AvailablePositive2500221 - 250178456350.5
xre family transcriptional regulatorDWV56_12550Not AvailablePositive2502314 - 250322235215.9
transposaseDWV56_12555Not AvailableNegative2503223 - 250398029277.7
site-specific integraseDWV56_12560Not AvailableNegative2503980 - 250461824757.2
integraseDWV56_12565Not AvailableNegative2504700 - 250569538529.4
xre family transcriptional regulatorDWV56_12570Not AvailablePositive2506177 - 250708535568.5
d-amino acid aminotransferaseDWV56_12575Not AvailablePositive2507189 - 250804632838.1

Displaying genes 2421 – 2430 of 2445 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.