Holdemanella biformis strain AF10-31

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF10-31 is a bacterium primarily found in feces, indicating its association with the intestinal microbiota of its host. This strain has been identified within Homo sapiens, suggesting a potential role in human gut health or disease. Genetically, Holdemanella biformis strain AF10-31 is characterized by having a single replicon. This feature is relevant for understanding its genetic stability and replication mechanisms, which can influence its adaptability and survival in the gastrointestinal tract. The accession number for this strain is QSAT00000000.1, which provides a reference for researchers looking to access its genomic data for further study. In terms of ecological significance, the presence of Holdemanella biformis in human feces may imply its involvement in the complex interactions within the gut microbiome. It could play a role in digestion, metabolism, or even the modulation of immune responses. Understanding the specific functions and interactions of this strain within the gut environment could provide insights into its contributions to human health and the maintenance of microbial diversity.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF10-31

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF10-31 AF10-31.Scaf105, whole genome

Gene Summary

Adenine Count

820351 bp

Thymine Count

835766 bp

Guanine Count

430183 bp

Cytosine Count

431129 bp

Genome Length

2518124 bp

Protein-coding Genes

2385 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar abc transporter permeaseDWV56_10555Not AvailableNegative2114386 - 211526732993.1
carbohydrate abc transporter substrate-binding proteinDWV56_10560Not AvailableNegative2115343 - 211667148479.3
arac family transcriptional regulatorDWV56_10565Not AvailablePositive2116854 - 211769032509.9
hypothetical proteinDWV56_10570Not AvailablePositive2117703 - 21178887228.56
ggdef domain-containing proteinDWV56_10575Not AvailableNegative2117908 - 211898741520.3
hypothetical proteinDWV56_10580Not AvailableNegative2118988 - 212025649081.3
thiamine diphosphokinaseDWV56_10585Not AvailableNegative2120260 - 212085322516.3
ribulose-phosphate 3-epimeraseDWV56_10590Not AvailableNegative2120856 - 212151524258.4
ribosome small subunit-dependent gtpase aDWV56_10595Not AvailableNegative2121512 - 212237532424.1
stk1 family pasta domain-containing ser/thr kinaseDWV56_10600Not AvailableNegative2122368 - 212405362509.4

Displaying genes 2051 – 2060 of 2445 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.