Agathobacter rectalis strain AF12-8

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis strain AF12-8 is a Gram-positive, non-motile, rod-shaped bacterium classified as a chemoheterotroph. This strain is anaerobic, thriving in environments devoid of oxygen. It is typically found in multiple habitats, including those associated with Homo sapiens, indicating its potential role in human-associated microbiomes. The optimal growth temperature for A. rectalis strain AF12-8 is 37°C, placing it within the mesophilic temperature range. The bacterium possesses one membrane and one replicon, characteristics that are common among certain anaerobic bacteria. Notably, A. rectalis strain AF12-8 does not undergo sporulation, suggesting that it relies on other survival strategies in its anaerobic habitats. The presence of flagella in A. rectalis strain AF12-8 may suggest some form of mobility; however, the organism is classified as non-motile. This discrepancy highlights the complexity of microbial classification and the need for further research to clarify the implications of flagella presence in this context. Ecologically, A. rectalis strain AF12-8's free-living nature and association with human hosts suggest it may play a role in the human gut microbiome, where it could contribute to various metabolic processes. Understanding its traits and ecological role can provide insights into its potential benefits or impacts on human health, particularly in the context of gut microbiota dynamics. The accession number for this strain is QSAE00000000.1, which aids in its identification and study within microbiological databases.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
Strainstrain AF12-8

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis strain AF12-8
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Agathobacter rectalis strain AF12-8 AF12-8.Scaf233, whole genome

Gene Summary

Adenine Count

1031526 bp

Thymine Count

1015931 bp

Guanine Count

729510 bp

Cytosine Count

706943 bp

Genome Length

3484385 bp

Protein-coding Genes

2783 genes

Non-Coding Genes

112 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar abc transporter substrate-binding proteinDWV78_00025Not AvailablePositive2323 - 387357181.9
16s ribosomal rnaNot AvailableNot AvailablePositive3546 - 5087Not Available
atp-binding cassette domain-containing proteinDWV78_00030Not AvailablePositive3870 - 473331828.6
abc transporter permeaseDWV78_00035Not AvailablePositive4736 - 684178978.3
chorismate synthaseDWV78_00040Not AvailableNegative6951 - 805439263.9
glycoside hydrolase family 13 proteinDWV78_00045Not AvailablePositive8801 - 1057669433.3
trna guanosine(34) transglycosylase tgtDWV78_00050Not AvailablePositive10603 - 1174543001.7
preprotein translocase subunit yajcDWV78_00055Not AvailablePositive11866 - 1217711344.0
3-isopropylmalate dehydrogenaseDWV78_00060Not AvailablePositive12389 - 1348939811.9
dihydroxy-acid dehydrataseDWV78_00065Not AvailablePositive13607 - 1528658901.6

Displaying genes 71 – 80 of 2895 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.