Holdemanella biformis strain AF15-20

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF15-20 is a bacterium that has been identified as inhabiting the feces of humans (Homo sapiens). This association with human feces suggests that H. biformis may play a role in the gut microbiome, contributing to digestive processes or influencing overall gut health. The strain is characterized by having a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in the complex environment of the human gut. The reference accession number for this strain is QRYQ00000000.1, which provides a basis for further genetic and functional studies. Understanding the ecological role of Holdemanella biformis in the human gut can provide insights into its potential benefits or impacts on human health. As part of the gut microbiome, this bacterium could be involved in various metabolic processes, nutrient absorption, or the maintenance of gut homeostasis. The specific functions and interactions of H. biformis within the gut ecosystem remain to be fully elucidated, but its presence in human feces underscores its significance in microbial studies related to human health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF15-20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF15-20 AF15-20.Scaf69, whole genome

Gene Summary

Adenine Count

860672 bp

Thymine Count

854649 bp

Guanine Count

446221 bp

Cytosine Count

438063 bp

Genome Length

2601418 bp

Protein-coding Genes

2503 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolaseDWW32_03455Not AvailablePositive648227 - 64945646231.6
arsc family transcriptional regulatorDWW32_03460Not AvailablePositive649453 - 64978513195.0
dna-3-methyladenine glycosylase iDWW32_03465Not AvailableNegative649782 - 65033021298.4
para family proteinDWW32_03470Not AvailablePositive650473 - 65129429678.3
parb/repb/spo0j family partition proteinDWW32_03475Not AvailablePositive651251 - 65218635804.8
hypothetical proteinDWW32_03480Not AvailablePositive652199 - 65247410855.1
hypothetical proteinDWW32_03485Not AvailablePositive652507 - 6526927254.65
helix-turn-helix domain-containing proteinDWW32_03490Not AvailablePositive652762 - 65364033419.5
toxin broDWW32_03495Not AvailablePositive653690 - 65443628474.2
pcfb family proteinDWW32_03500Not AvailablePositive654526 - 65502619020.1

Displaying genes 691 – 700 of 2606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.