Holdemanella biformis strain AF15-20

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF15-20 is a bacterium that has been identified as inhabiting the feces of humans (Homo sapiens). This association with human feces suggests that H. biformis may play a role in the gut microbiome, contributing to digestive processes or influencing overall gut health. The strain is characterized by having a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in the complex environment of the human gut. The reference accession number for this strain is QRYQ00000000.1, which provides a basis for further genetic and functional studies. Understanding the ecological role of Holdemanella biformis in the human gut can provide insights into its potential benefits or impacts on human health. As part of the gut microbiome, this bacterium could be involved in various metabolic processes, nutrient absorption, or the maintenance of gut homeostasis. The specific functions and interactions of H. biformis within the gut ecosystem remain to be fully elucidated, but its presence in human feces underscores its significance in microbial studies related to human health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF15-20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF15-20 AF15-20.Scaf69, whole genome

Gene Summary

Adenine Count

860672 bp

Thymine Count

854649 bp

Guanine Count

446221 bp

Cytosine Count

438063 bp

Genome Length

2601418 bp

Protein-coding Genes

2503 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent helicaseDWW32_11095Not AvailableNegative2182914 - 218423651427.9
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDWW32_11100Not AvailablePositive2184318 - 218521733995.9
sam-dependent methyltransferaseDWW32_11105Not AvailableNegative2185202 - 218585524946.0
rna polymerase sigma factor rpodDWW32_11110Not AvailableNegative2185855 - 218709947614.2
dna primaseDWW32_11115Not AvailableNegative2187104 - 218887068457.7
glycine--trna ligaseDWW32_11120Not AvailableNegative2188870 - 219024952750.3
dna repair protein recoDWW32_11130Not AvailableNegative2190850 - 219157228374.3
gtpase eraDWW32_11135Not AvailableNegative2191562 - 219247034876.4
diacylglycerol kinase family proteinDWW32_11140Not AvailableNegative2192483 - 219283013313.6
rrna maturation rnase ybeyDWW32_11145Not AvailableNegative2192811 - 219326617928.3

Displaying genes 2171 – 2180 of 2606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.