Holdemanella biformis strain AF15-20

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF15-20 is a bacterium that has been identified as inhabiting the feces of humans (Homo sapiens). This association with human feces suggests that H. biformis may play a role in the gut microbiome, contributing to digestive processes or influencing overall gut health. The strain is characterized by having a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in the complex environment of the human gut. The reference accession number for this strain is QRYQ00000000.1, which provides a basis for further genetic and functional studies. Understanding the ecological role of Holdemanella biformis in the human gut can provide insights into its potential benefits or impacts on human health. As part of the gut microbiome, this bacterium could be involved in various metabolic processes, nutrient absorption, or the maintenance of gut homeostasis. The specific functions and interactions of H. biformis within the gut ecosystem remain to be fully elucidated, but its presence in human feces underscores its significance in microbial studies related to human health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF15-20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF15-20 AF15-20.Scaf69, whole genome

Gene Summary

Adenine Count

860672 bp

Thymine Count

854649 bp

Guanine Count

446221 bp

Cytosine Count

438063 bp

Genome Length

2601418 bp

Protein-coding Genes

2503 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosylglycinamide formyltransferaseDWW32_10895Not AvailableNegative2140464 - 214104821662.6
phosphoribosylformylglycinamidine cyclo-ligaseDWW32_10900Not AvailableNegative2141042 - 214207336622.3
amidophosphoribosyltransferaseDWW32_10905Not AvailableNegative2142077 - 214345650857.0
phosphoribosylformylglycinamidine synthaseDWW32_10910Not AvailableNegative2143458 - 2147159136545.0
5-(carboxyamino)imidazole ribonucleotide mutaseDWW32_10915Not AvailableNegative2147170 - 214765817022.9
abc transporter substrate-binding proteinDWW32_10920Not AvailableNegative2147951 - 214960961344.1
glycyl radical proteinDWW32_10925Not AvailableNegative2150014 - 215243192025.1
glycyl-radical enzyme activating proteinDWW32_10930Not AvailablePositive2152613 - 215352734512.2
deor/glpr transcriptional regulatorDWW32_10935Not AvailablePositive2153592 - 215433827946.6
abc transporter substrate-binding proteinDWW32_10940Not AvailableNegative2154818 - 215650061521.7

Displaying genes 2131 – 2140 of 2606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.