Holdemanella biformis strain AF15-20

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF15-20 is a bacterium that has been identified as inhabiting the feces of humans (Homo sapiens). This association with human feces suggests that H. biformis may play a role in the gut microbiome, contributing to digestive processes or influencing overall gut health. The strain is characterized by having a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in the complex environment of the human gut. The reference accession number for this strain is QRYQ00000000.1, which provides a basis for further genetic and functional studies. Understanding the ecological role of Holdemanella biformis in the human gut can provide insights into its potential benefits or impacts on human health. As part of the gut microbiome, this bacterium could be involved in various metabolic processes, nutrient absorption, or the maintenance of gut homeostasis. The specific functions and interactions of H. biformis within the gut ecosystem remain to be fully elucidated, but its presence in human feces underscores its significance in microbial studies related to human health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF15-20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF15-20 AF15-20.Scaf69, whole genome

Gene Summary

Adenine Count

860672 bp

Thymine Count

854649 bp

Guanine Count

446221 bp

Cytosine Count

438063 bp

Genome Length

2601418 bp

Protein-coding Genes

2503 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isoleucine--trna ligaseDWW32_10480Not AvailableNegative2046477 - 2049203104107.0
hypothetical proteinDWW32_10485Not AvailableNegative2049447 - 205018728217.4
duf552 domain-containing proteinDWW32_10490Not AvailableNegative2050200 - 205063116039.7
ribosome-associated translation inhibitor raiaDWW32_10495Not AvailableNegative2050747 - 205128020385.4
tigr01212 family radical sam proteinDWW32_10505Not AvailablePositive2052759 - 205368835677.9
tyrosine--trna ligaseDWW32_10510Not AvailableNegative2053705 - 205493746508.6
peptidoglycan bridge formation glycyltransferase fema/femb family proteinDWW32_10515Not AvailableNegative2055191 - 205644449138.4
leucine--trna ligaseDWW32_10520Not AvailableNegative2056456 - 205887091934.5
peptidoglycan bridge formation glycyltransferase fema/femb family proteinDWW32_10525Not AvailableNegative2059224 - 206028241712.1
peptidoglycan bridge formation glycyltransferase fema/femb family proteinDWW32_10530Not AvailableNegative2060340 - 206155447780.2

Displaying genes 2051 – 2060 of 2606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.