Holdemanella biformis strain AF15-20

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AF15-20 is a bacterium that has been identified as inhabiting the feces of humans (Homo sapiens). This association with human feces suggests that H. biformis may play a role in the gut microbiome, contributing to digestive processes or influencing overall gut health. The strain is characterized by having a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in the complex environment of the human gut. The reference accession number for this strain is QRYQ00000000.1, which provides a basis for further genetic and functional studies. Understanding the ecological role of Holdemanella biformis in the human gut can provide insights into its potential benefits or impacts on human health. As part of the gut microbiome, this bacterium could be involved in various metabolic processes, nutrient absorption, or the maintenance of gut homeostasis. The specific functions and interactions of H. biformis within the gut ecosystem remain to be fully elucidated, but its presence in human feces underscores its significance in microbial studies related to human health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AF15-20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AF15-20 AF15-20.Scaf69, whole genome

Gene Summary

Adenine Count

860672 bp

Thymine Count

854649 bp

Guanine Count

446221 bp

Cytosine Count

438063 bp

Genome Length

2601418 bp

Protein-coding Genes

2503 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeDWW32_08350Not AvailablePositive1610754 - 161203146658.4
homoserine o-succinyltransferaseDWW32_08355Not AvailablePositive1612111 - 161309138376.9
cysteine synthase aDWW32_08360Not AvailableNegative1613114 - 161404332465.8
had family hydrolaseDWW32_08365Not AvailableNegative1614203 - 161498229104.0
transketolase family proteinDWW32_08370Not AvailableNegative1614973 - 161589933350.5
transketolaseDWW32_08375Not AvailableNegative1615899 - 161671730131.4
hypothetical proteinDWW32_08380Not AvailableNegative1616835 - 161788140560.1
xre family transcriptional regulatorDWW32_08385Not AvailableNegative1618055 - 161842914318.8
rlob domain-containing proteinDWW32_08390Not AvailableNegative1618456 - 161908524125.0
atp-binding proteinDWW32_08395Not AvailableNegative1619079 - 162025745863.2

Displaying genes 1641 – 1650 of 2606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.