Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DWX04_04590 | Not Available | Negative | 1122132 - 1122551 | 15438.4 |
| hypothetical protein | DWX04_04595 | Not Available | Negative | 1122690 - 1123082 | 14727.0 |
| dna-binding protein | DWX04_04600 | Not Available | Negative | 1123079 - 1123579 | 17891.4 |
| hypothetical protein | DWX04_04605 | Not Available | Positive | 1123767 - 1124201 | 16460.7 |
| nucleoside-diphosphate sugar epimerase | DWX04_04610 | Not Available | Positive | 1124438 - 1125646 | 45735.1 |
| legc family aminotransferase | DWX04_04615 | Not Available | Positive | 1125665 - 1126819 | 43374.7 |
| udp-n-acetylglucosamine 2-epimerase (hydrolyzing) | DWX04_04620 | Not Available | Positive | 1126816 - 1127946 | 42079.5 |
| pyridoxal-dependent decarboxylase | DWX04_04625 | Not Available | Positive | 1127939 - 1129108 | 43966.1 |
| atp-grasp domain-containing protein | DWX04_04630 | Not Available | Positive | 1129080 - 1130078 | 38306.2 |
| n-acetylneuraminate synthase | DWX04_04635 | Not Available | Positive | 1130075 - 1131079 | 36911.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

