Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | DWX04_04540 | Not Available | Positive | 1110965 - 1111561 | 22643.4 |
| 50s ribosomal protein l35 | DWX04_04545 | Not Available | Positive | 1111633 - 1111830 | 7367.31 |
| 50s ribosomal protein l20 | DWX04_04550 | Not Available | Positive | 1111942 - 1112292 | 13181.3 |
| 4fe-4s ferredoxin | DWX04_04555 | Not Available | Positive | 1112757 - 1113536 | 29051.1 |
| endolytic transglycosylase mltg | DWX04_04560 | Not Available | Negative | 1113575 - 1114609 | 39558.8 |
| alpha-n-arabinofuranosidase | DWX04_04565 | Not Available | Positive | 1114810 - 1116333 | 57342.5 |
| dna/rna non-specific endonuclease | DWX04_04570 | Not Available | Negative | 1116423 - 1117280 | 32331.8 |
| alpha-l-fucosidase | DWX04_04575 | Not Available | Positive | 1117405 - 1118754 | 51861.6 |
| hypothetical protein | DWX04_04580 | Not Available | Positive | 1118773 - 1120812 | 79662.3 |
| transcriptional regulator | DWX04_04585 | Not Available | Positive | 1121236 - 1122066 | 31690.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

